If you’re on the hunt for a treat that’s indulgent yet packed with wholesome goodness, these Healthy & Moist Chocolate Zucchini Muffins truly deliver on all fronts. Thanks to an abundance of shredded zucchini and a handful of sneaky nutritious swaps, these muffins turn breakfast (or snack time) into an occasion worth looking forward to. They’re fluffy, rich in chocolate flavor, and somehow manage to stay perfectly moist for days—without a trace of guilt. Whether you’re baking a batch for your family or sneaking greens into your own dessert, these muffins will quickly earn a home in your go-to recipe collection.

Ingredients You’ll Need
You might be surprised at how a handful of simple, everyday pantry items transform into something so memorable. Each ingredient in these Healthy & Moist Chocolate Zucchini Muffins is picked for the delicious flavor and luscious texture it brings, so don’t skip a thing!
- Grated zucchini: Adds incredible moisture and subtle sweetness, making each muffin tender and keeping them from drying out.
- Large eggs: Help bind everything together and give the muffins structure for that perfect crumb.
- Avocado oil (or olive oil): Keeps the crumb light and moist, plus brings healthy fats to the mix.
- Maple syrup: Natural sweetness that pairs beautifully with chocolate and brings gentle caramel notes.
- Vanilla extract: A classic flavor booster that deepens both the chocolate and zucchini notes.
- Unsweetened applesauce: Replaces some oil for a lighter muffin, and ups the moisture without extra fat.
- Whole wheat flour: Adds nutrition and a pleasant nutty undertone, while providing enough structure.
- Unsweetened cocoa powder: For that rich chocolatey backbone—choose a good quality powder for the best flavor.
- Baking soda: Works with baking powder to give the muffins just the right lift.
- Baking powder: Ensures your muffins rise tall and fluffy every time.
- Cinnamon: Brings warmth and complexity, which works magically with chocolate and zucchini.
- Salt: Brightens and balances all the sweet and chocolate flavors.
- Chocolate chips: Pockets of gooey, melty chocolate mean every bite is a mini celebration—don’t skip!
How to Make Healthy & Moist Chocolate Zucchini Muffins
Step 1: Prep Your Oven and Muffin Tin
Start by preheating your oven to 375℉ so it’s ready when your batter is. Line a 12-cup muffin tin with paper liners, or lightly grease it, so the muffins come out effortlessly and with perfect edges every time.
Step 2: Squeeze Out That Zucchini
Place your already-measured shredded zucchini in the center of a clean kitchen towel or paper towel. Wrap it up tightly, then firmly squeeze out as much moisture as possible—this simple step is what keeps your Healthy & Moist Chocolate Zucchini Muffins light and never soggy.
Step 3: Mix the Wet Ingredients
Add the drained zucchini to a large mixing bowl, followed by the eggs, avocado (or olive) oil, maple syrup, vanilla, and applesauce. Whisk these together until everything is well-combined and glossy. This wet mixture is the secret to the muffins’ soft interior and real staying power.
Step 4: Add in the Dry Ingredients
To the bowl, add your whole wheat flour, cocoa powder, baking soda, baking powder, cinnamon, and salt. Stir with a spoon or spatula just until the batter comes together. Don’t overdo it—overmixing can make the muffins tough instead of their signature moist and fluffy.
Step 5: Fold in the Chocolate Chips
Gently fold in the chocolate chips, making sure they’re evenly distributed for chocolate in every bite. Little pockets of melted chocolate take these muffins over the top!
Step 6: Portion and Bake
Divide the batter evenly between your muffin tin compartments, filling each about three-quarters of the way full. Sprinkle a few more chocolate chips on top for good measure—because you can never have too much chocolate. Bake in your preheated oven for 18-20 minutes, or until a toothpick poked in the center comes out clean. For extra accuracy, use a kitchen thermometer: the center should be about 200℉.
Step 7: Cool and Enjoy
Let the muffins cool in the tin for about 10 minutes, then transfer them to a wire rack to cool completely. This helps set the crumb and keeps your Healthy & Moist Chocolate Zucchini Muffins from getting soggy as they rest.
How to Serve Healthy & Moist Chocolate Zucchini Muffins

Garnishes
A sprinkle of extra chocolate chips on top before baking is always a crowd-pleaser, but you could also dust cooled muffins with a little cocoa powder or even a hint of powdered sugar for a lovely finish. Pair with a pat of creamy nut butter—like almond or peanut—for an even more decadent bite.
Side Dishes
Serve your muffins alongside a bowl of Greek yogurt and fresh fruit for a nourishing breakfast, or with a piping hot coffee or matcha latte for a cozy afternoon treat. A handful of berries or some sliced bananas make the chocolate flavors sing.
Creative Ways to Present
Turn your Healthy & Moist Chocolate Zucchini Muffins into a brunch showstopper by arranging them on a pretty cake stand, nestled among edible flowers or fresh mint sprigs. For a fun twist, slice them in half and spread on a swipe of chocolate hazelnut spread before sandwiching back together.
Make Ahead and Storage
Storing Leftovers
Once fully cooled, store your muffins in an airtight container in the fridge for up to 4-5 days. They’ll stay soft, chocolatey, and just as delicious as the day you baked them.
Freezing
Healthy & Moist Chocolate Zucchini Muffins freeze beautifully. Pop them into a freezer-safe zip bag or airtight container, then freeze for up to one month. They’re the perfect make-ahead snack—just grab one and go!
Reheating
Remove a muffin from the fridge or freezer and let it come to room temperature, or warm it up gently in the microwave for 15-20 seconds. This little zap brings back the gooey chocolate chips and bakery-fresh flavor.
FAQs
Can I make these muffins gluten-free?
Absolutely! Swap the whole wheat flour for your favorite gluten-free all-purpose blend. Be mindful that the texture will change slightly, but the muffins will still be moist and delicious.
Do the muffins actually taste like zucchini?
Not at all! The zucchini practically melts away during baking, giving these Healthy & Moist Chocolate Zucchini Muffins their crave-worthy texture without any strong veggie flavor.
Can I use another type of oil?
Yes, you can use melted coconut oil or even canola oil in place of avocado or olive oil. Each brings its own unique flavor, so pick your favorite or use what you have on hand.
Can I reduce the sugar or use a different sweetener?
Maple syrup is a lovely natural sweetener here, but you could also use honey. Cutting back on the syrup will make the muffins less sweet and may alter the moisture a bit, but they’ll still turn out tasty.
How do I know when the muffins are done baking?
A toothpick should come out mostly clean with a few moist crumbs stuck to it, or check that the center of a muffin registers close to 200℉. Baking too long will dry them out, so keep a close eye during those last few minutes.
Final Thoughts
These Healthy & Moist Chocolate Zucchini Muffins have a way of making friends with everyone who tries them—whether you’re a veggie skeptic or a die-hard chocolate lover. So, roll up your sleeves, grab some zucchini, and treat yourself to a batch. I can’t wait for you to taste just how luscious and irresistible healthy baking can be!
Print
Healthy & Moist Chocolate Zucchini Muffins Recipe
These Healthy & Moist Chocolate Zucchini Muffins are a delicious treat that sneaks in some veggies for added nutrition. Moist and chocolatey, these muffins are perfect for breakfast or dessert.
- Total Time: 28 minutes
- Yield: 12 servings
Ingredients
Dry Ingredients:
- 1¼ cups whole wheat flour
- ¼ cup unsweetened cocoa powder
- ½ teaspoon baking soda
- 1 teaspoon baking powder
- 1 teaspoon cinnamon
- ½ teaspoon salt
Wet Ingredients:
- 1½ cups grated zucchini, measure before squeezing moisture out
- 2 large eggs
- ¼ cup avocado oil or olive oil
- ⅓ cup maple syrup
- 2 teaspoons vanilla extract
- ⅔ cup unsweetened applesauce
Add-ins:
- ⅓ cup chocolate chips, plus extra for topping
Instructions
- Preheat the Oven: Preheat your oven to 375℉ and line a 12-hole muffin tin. Set aside.
- Prepare Zucchini: Place pre-measured shredded zucchini in a clean kitchen towel and squeeze out excess moisture.
- Mix Wet Ingredients: In a large bowl, combine zucchini, eggs, oil, maple syrup, vanilla, and applesauce. Whisk to combine.
- Add Dry Ingredients: Add flour, cocoa powder, baking soda, baking powder, cinnamon, and salt to the wet ingredients. Stir until just combined.
- Include Chocolate Chips: Fold in chocolate chips.
- Bake: Divide batter into muffin tin compartments, top with additional chocolate chips, and bake for 18-20 minutes or until a toothpick comes out clean.
- Cool and Store: Cool muffins for 10 minutes before transferring to a wire rack. Store leftovers in an airtight container in the fridge or freezer.
Notes
- Overmixing the batter can result in dense muffins.
- Ensure muffins are fully cooled before storing.
- For a moist texture, do not overbake.
- Prep Time: 10 minutes
- Cook Time: 18 minutes
- Category: Breakfast, Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Nutrition
- Serving Size: 1 muffin
- Calories: 186 kcal
- Sugar: 12g
- Sodium: 231mg
- Fat: 8g
- Saturated Fat: 2g
- Unsaturated Fat: 5g
- Trans Fat: 0.004g
- Carbohydrates: 26g
- Fiber: 3g
- Protein: 4g
- Cholesterol: 37mg